Profil ADME, Toksisitas, dan Efikasi In Silico d-Limonene terhadap Oryctes rhinoceros
DOI:
https://doi.org/10.54387/semnasbun.v1i1.202Keywords:
Kelapa sawit, Oryctes rhinoceros, bioinsektisida, molecular docking, d-LimoneneAbstract
Kumbang tanduk (Oryctes rhinoceros L.) merupakan hama utama pada tanaman kelapa sawit (Elaeis guineensis Jacq.) yang tingkat infeksinya dapat mencapai hampir 100%, terutama di area peremajaan yang banyak terdapat sisa-sisa batang membusuk sebagai media perkembangbiakan. Pengendalian hama ini memerlukan alternatif yang lebih ramah lingkungan dibandingkan insektisida sintetis. Penelitian ini bertujuan untuk mengidentifikasi senyawa fitokimia kandidat bioinsektisida terbaik melalui pendekatan in silico terhadap protein target Oryctes rhinoceros. Metode yang digunakan meliputi skrining farmakokinetik (ADME) berdasarkan Aturan Lipinski dan Hao, analisis ekotoksisitas non-target menggunakan ProTox 3.0, toksisitas terhadap manusia menggunakan, serta molecular docking menggunakan PyRx, PyMOL, dan BIOVIA Discovery Studio terhadap tiga protein target, yaitu Defensin, Rhinocerosin, dan Scarabaecin. Sepuluh senyawa fitokimia dianalisis, meliputi d-Limonene, Eugenol, Citronellal, Dillapiole, Diplopterol, Clerodin, 12'-Hydroxy-7'-Multijuguinone, Azadirachtin, Squamocin, dan Rotenone. Berdasarkan profil ADME dan toksisitas menunjukkan bahwa d-Limonene, Eugenol, dan Citronellal merupakan senyawa fitokimia potensial yang layak dilanjutkan ke tahap penambatan molekuler. Hasil penambatan molekuler menunjukkan bahwa d-Limonene memiliki afinitas pengikatan tertinggi dan paling konsisten terhadap ketiga protein target (Rhinocerosin: −5,7 kkal/mol; Scarabaecin: −5,3 kkal/mol; Defensin: −4,3 kkal/mol), dengan interaksi didominasi ikatan hidrofobik Alkil dan Pi-Alkil terhadap residu PHE, TYR, LEU, VAL, dan ILE. Rotenone dan Squamocin didiskualifikasi karena toksisitas fatal pada manusia dan spektrum racun ekologis yang luas. Kesimpulannya, d-Limonene merupakan kandidat bioinsektisida paling prospektif terhadap Oryctes rhinoceros berdasarkan integrasi profil ADME, keamanan lingkungan, dan kekuatan interaksi molekuler terhadap protein target serangga.
References
Abbaszadeh, G., Srivastava, C., & Walia, S. (2014). Insecticidal and antifeedant activities of clerodane diterpenoids isolated from the Indian bhant tree, Clerodendron infortunatum, against the cotton bollworm, Helicoverpa armigera. Journal of Insect Science, 14(29), 1–13. https://doi.org/10.1093/jis/14.1.29
Abdelli, I., Hassani, F., Bekkel Brikci, S., & Ghalem, S. (2021). In silico study the inhibition of angiotensin converting enzyme 2 receptor of COVID-19 by Ammoides verticillata components harvested from Western Algeria. Journal of Biomolecular Structure and Dynamics, 39(9), 3263–3276. https://doi.org/10.1080/07391102.2020.1763199
Akbar, M. J., & Rustam, R. (2019). Uji beberapa konsentrasi ekstrak akar tuba (Derris elliptica Benth) untuk mengendalikan larva kumbang tanduk (Oryctes rhinoceros Linnaeus) pada tanaman kelapa sawit. Jurnal Agrotek Tropika, 3(2), 65–74. https://doi.org/10.25077/jpt.3.2.65-74.2019
Banerjee, P., Kemmler, E., Dunkel, M., & Preissner, R. (2024). ProTox 3.0: A webserver for the prediction of toxicity of chemicals. Nucleic Acids Research, 52(W1), W513–W520. https://doi.org/10.1093/nar/gkae303
Benatar, G. V., Nurhayati, Y., & Ridwan, N. F. (2025). Molecular docking and dynamics reveal the potential of limonene and β-linalool as natural fungicides against mango anthracnose pathogen. ChemistrySelect, 10(4), e202404250. https://doi.org/10.1002/slct.202404250
Caren, J., Zhu, Y.-C., Read, Q. D., & Du, Y. (2025). Risk assessment of effects of essential oils on honey bees (Apis mellifera L.). Insects, 16(3), 303. https://doi.org/10.3390/insects16030303
Chandra, A., Amalia, Z., Hidayati, L., Adinale, M. P., & Soesanto, L. (2026). Virtual screening of the antibacterial compound Paenibacillus polymyxa against Xanthomonas oryzae pv. oryzae. Jurnal Biologi Tropis, 26(2), 815–830. https://doi.org/10.29303/jbt.v26i2.11894
Dalu, T., Wasserman, R. J., Jordaan, M., Froneman, W. P., & Weyl, O. L. (2015). An assessment of the effect of rotenone on selected non-target aquatic fauna. PLoS ONE, 10(11), e0142140. https://doi.org/10.1371/journal.pone.0142140
Daulay, N. P., Alyani Putri, A., Ramadani, O. N., Agata, E. V., & Hamid, M. (2025). Analisis perkembangan produksi kelapa sawit berdasarkan luas lahan dan jumlah pabrik kelapa sawit (Studi pada Kabupaten Rokan Hulu). Jurnal Pengabdian Masyarakat dan Riset Pendidikan, 4(2), 11335–11342. https://doi.org/10.31004/jerkin.v4i2.3935
Delaney, J. S. (2004). ESOL: Estimating aqueous solubility directly from molecular structure. Journal of Chemical Information and Computer Sciences, 44(3), 1000–1005. https://doi.org/10.1021/ci034243x
Feng, J., Wang, R., Chen, Z., Zhang, S., Yuan, S., Cao, H., & Yang, W. (2020). Formulation optimization of D-limonene-loaded nanoemulsions as a natural and efficient biopesticide. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 596, 124746. https://doi.org/10.1016/j.colsurfa.2020.124746
Fernandes, M. J. G., Pereira, R. B., Pereira, D. M., Fortes, A. G., Castanheira, E. M. S., & Gonçalves, M. S. T. (2020). New eugenol derivatives with enhanced insecticidal activity. International Journal of Molecular Sciences, 21(23), 9257. https://doi.org/10.3390/ijms21239257
Fiaz, M., Martínez, L. C., Costa, M. da S., Cossolin, J. F. S., Plata-Rueda, A., Gonçalves, W. G., Sant’Ana, A. E. G., Zanuncio, J. C., & Serrão, J. E. (2018). Squamocin induce histological and ultrastructural changes in the midgut cells of Anticarsia gemmatalis (Lepidoptera: Noctuidae). Ecotoxicology and Environmental Safety, 156, 1–8. https://doi.org/10.1016/j.ecoenv.2018.02.080
Hao, G., Dong, Q., & Yang, G. (2011). A comparative study on the constitutive properties of marketed pesticides. Molecular Informatics, 30(6‐7), 614–622. https://doi.org/10.1002/minf.201100009
Kilani-Morakchi, S., Morakchi-Goudjil, H., & Sifi, K. (2021). Azadirachtin-based insecticide: Overview, risk assessments, and future directions. Frontiers in Agronomy, 3, 676208. https://doi.org/10.3389/fagro.2021.676208
Kumar, R. P., Dinesh Babu, K. V., & Evans, D. A. (2019). Isolation, characterization and mode of action of a larvicidal compound, 22-hydroxyhopane from Adiantum latifolium Lam. against Oryctes rhinoceros Linn. Pesticide Biochemistry and Physiology, 153, 161–170. https://doi.org/10.1016/j.pestbp.2018.11.018
Li, P., Tian, Y., Du, M., Xie, Q., Chen, Y., Ma, L., Huang, Y., Yin, Z., Xu, H., & Wu, X. (2023). Mechanism of rotenone toxicity against Plutella xylostella: New perspective from a spatial metabolomics and lipidomics study. Journal of Agricultural and Food Chemistry, 71(1), 211–222. https://doi.org/10.1021/acs.jafc.2c06292
Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (1997). Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced Drug Delivery Reviews, 23(1–3), 3–25. https://doi.org/10.1016/S0169-409X(96)00423-1
Manojkumar, S., Thandeeswaran, M., Thangavel, S. K., Arjunan, A., Muthuselvam, M., Kalaiarasi, G., & Gnanajothi, K. (2024). Phytochemical screening, in silico molecular docking, ADME properties, and in vitro antioxidant, anticancer, and antidiabetic activity of marine halophyte Suaeda maritima (L.) Dumort. ACS Omega, 9(10), 11200–11216. https://doi.org/10.1021/acsomega.3c05591
Maysaroh, U., Pradipta, A. P., & Amelia, I. (2026). Habitat study and breeding site potential of Oryctes rhinoceros in oil palm plantations Sei Silau Plantations, Asahan Regency, North Sumatra. Jurnal Riset Perkebunan, 7(1), 9–16. https://doi.org/10.25077/jrp.7.1.9-16.2026
Mursiti, S., Lestari, N. A., Febriana, Z., Rosanti, Y. M., & Ningsih, T. W. (2019). The activity of D-limonene from sweet orange peel (Citrus sinensis L.) extract as a natural insecticide controller of bedbugs (Cimex cimicidae). Oriental Journal of Chemistry, 35(4), 1420–1425. https://doi.org/10.13005/ojc/350424
Pereira Filho, A. A., do Vale, V. F., de Oliveira Monteiro, C. M., Barrozo, M. M., Stanton, M. A., Yamaguchi, L. F., Kato, M. J., & Araújo, R. N. (2024). Effects of Piper aduncum (Piperales: Piperaceae) essential oil and its main component dillapiole on detoxifying enzymes and acetylcholinesterase activity of Amblyomma sculptum (Acari: Ixodidae). International Journal of Molecular Sciences, 25(10), 5420. https://doi.org/10.3390/ijms25105420
Pusat Data dan Sistem Informasi Pertanian. (2024). Outlook kelapa sawit. Sekretariat Jenderal - Kementerian Pertanian.
Qasim, M., Islam, W., Rizwan, M., Hussain, D., Noman, A., Khan, K. A., & Han, X. (2024). Impact of plant monoterpenes on insect pest management and insect-associated microbes. Heliyon, 10(20), e39120. https://doi.org/10.1016/j.heliyon.2024.e39120
Ramadhani, R. H., Santi, I. S., & Tarmadja, S. (2025). Efektivitas bioinsektisida untuk mengendalikan larva kumbang tanduk (Oryctes rhinoceros) pada cacahan batang kelapa sawit. Agroforetech, 3(3), 1749–1756.
Reis, S. L., Mantello, A. G., Macedo, J. M., Gelfuso, E. A., da Silva, C. P., Fachin, A. L., Cardoso, A. M., & Beleboni, R. O. (2016). Typical monoterpenes as insecticides and repellents against stored grain pests. Molecules, 21(3), 258. https://doi.org/10.3390/molecules21030258
Rolanda, V., Riza, F., Aulia, N., & Agustina, A. (2024). Cengkeh leave (Sizygium aromatikum L.) a natural reppelent of salt fish in Simuelue Islands. Berkala Perikanan Terubuk, 52(3), 2654–2714.
Sacco, D., Velíšek, J., & Mikušková, N. (2025). Toxicological effects of azadirachtin on aquatic species: A review of its role in biopesticides. Aquatic Toxicology, 278, 107547. https://doi.org/10.1016/j.aquatox.2024.107547
Sanjaya, Y., Dinyati, A., Syahwa, D., Aulia, I., Rijal, M., Priyanti, Khairiah, A., Riyanti, R., Lathifah, S., & M, D. (2021). Studi eksplorasi pemanfaatan jenis-jenis tanaman sebagai insektisida nabati di Perumahan Pondok Arum, Kecamatan Karawaci, Kota Tangerang, Banten. Prosiding Seminar Nasional BIO, 1, 267–279.
Serrano, M. A. R., Pivatto, M., Francisco, W., Danuello, A., Regasini, L. O., Lopes, E. M. C., Lopes, M. N., Young, M. C. M., & Bolzani, V. S. (2010). Acetylcholinesterase inhibitory pyridine alkaloids of the leaves of Senna multijuga. Journal of Natural Products, 73(3), 482–484. https://doi.org/10.1021/np900644x
Sreeletha, C., & Geetha, P. R. (2011). Pesticidal effects of Clerodendron infortunatum on the fat body of Oryctes rhinoceros (Linn.) male. Journal of Biopesticides, 4(1), 13–17.
Tak, J.-H., & Isman, M. B. (2015). Enhanced cuticular penetration as the mechanism for synergy of insecticidal constituents of rosemary essential oil in Trichoplusia ni. Scientific Reports, 5, 12690. https://doi.org/10.1038/srep12690
Tak, J.-H., & Isman, M. B. (2017). Penetration-enhancement underlies synergy of plant essential oil terpenoids as insecticides in the cabbage looper, Trichoplusia ni. Scientific Reports, 7, 42432. https://doi.org/10.1038/srep42432
Tito, S. I., Zayadi, H., Laili, S., & Djuhari. (2026). Effectiveness test of Marshal 5G on larvae and imago Oryctes rhinoceros in a community oil palm plantation Pelalawan Regency, Riau, Indonesia. BIO Web of Conferences, 209, 01011. https://doi.org/10.1051/bioconf/202620901011
Venancio, A. N., Silva, M. J., Parreira, L. A., Júlio, A. A., Souza, G. R., Conceição Santos, M. F., & Menini, L. (2025). Citronellal: A natural aldehyde with important properties. Natural Product Research, 39(5), 1199–1212. https://doi.org/10.1080/14786419.2024.2332949
Wong, A. J., Hidrayani, Hamid, H., Ikhsan, Z., & Oktavia, A. (2022). Populasi dan tingkat serangan kumbang tanduk (Oryctes rhinoceros L.) pada pertanaman kelapa sawit di PT. Cakra Alam Sejati, Provinsi Riau. Jurnal Riset Perkebunan, 3, 1–11.
Downloads
Published
Issue
Section
Citation Check
License
Copyright (c) 2026 Andre Chandra, Zhafirah Amalia, Lusiana Hidayati, Maulin Eka Cahyani, Fijar Muhamad Fathurohman

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.


